PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 344aa    MW: 37738.8 Da    PI: 8.3037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025562genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29180239159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  DCAR_025562 180 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHP 239
                  58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.463175241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-29179241IPR003657WRKY domain
SuperFamilySSF1182903.27E-25179241IPR003657WRKY domain
SMARTSM007741.1E-33180240IPR003657WRKY domain
PfamPF031062.4E-24181239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEYTNYVNTS LDLNANPRQL FNVLPVKHEA QSSFIDFGLS TTSLLHDQSG ALVEELNRVN  60
AENKKLTEML TVMCENYNAL RSNLMEYMNR NPEVTTTDDS TTSSKKRKTT ENTINNNNNG  120
SATAAAAGAV GAVVNRSSAE SSSSEEDTTS FKKAREEHIQ AKISRVYTRS EPSDTTGLLV  180
KDGYQWRKYG QKVTRDNPCP RAYFKCSFAP TCPVKKKVQR SVEDQSILVA TYEGEHNHPH  240
PAKVEANNSG SNRTASTLSS VPGSASLNTS RPVNNTITLD LTKSNKSNED AIKSSAPKVE  300
SPEFQQFLID HMASSLTKDP SFKAALAAAI SGQILRQNQT EKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201792411374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4845792e-41AY484579.1 Vitis aestivalis putative WRKY4 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267919.11e-129probable WRKY transcription factor 40-like
SwissprotQ9SAH71e-96WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLQ9FR291e-148Q9FR29_PETCR; Transcription factor WRKY4
STRINGVIT_09s0018g00240.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-87WRKY DNA-binding protein 40